PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g06550.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 241aa    MW: 25532.2 Da    PI: 6.9559
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g06550.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP25.22.8e-0889128238
                         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....d 38 
                                     ++++Lr+++++   ++ek+e+ g++t+neva+eLv e     +
  Zjn_sc00020.1.g06550.1.sm.mkhc  89 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVVEfsdpnN 128
                                     789********...*****999************998665552 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-1984187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013720.007588193IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.9E-690120IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.4E-21113239IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.54E-15140193No hitNo description
PfamPF087811.2E-15140211IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MASGALQSGG AAHSASNSGG SPSGHAASDR GAASASISTP ASGSTVARRL DALDLQGDDA  60
PSSQPAARFV SPKRKKKKRC ARAVGPEKNG RGLRQFSMRV CEKVESKGRT TYNEVADELV  120
VEFSDPNNVD SPDPDNPNAT RPHATVEVEI SEDMQLVHFD FNSTPFELQD DSFVLKAMGL  180
SGKEETDMVQ VPDANGGSVE CSSTPNNHWH QSQTPARPKG LRLPPSAPIP GILKGRVKHE  240
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-1582141162PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278KRKKKKR
27378RKKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0094151e-54BT009415.1 Triticum aestivum clone wlmk1.pk0005.e2:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983025.15e-56PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY24e-28DPB_ARATH; Transcription factor-like protein DPB
TrEMBLE5GC863e-64E5GC86_CUCME; Transcription factor DP
STRINGSi036476m1e-55(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-23Transcription factor DP